The API returns the same output for events of a repo as for an issue
Examples
(gt <- get_timelines("Bioconductor/Contributions", 400))
#> Warning: This is under preview and may fail.
#> ℹ Running gh query
#> ℹ Running gh query, got 100 records of about 200
#> assignees assignee label state locked
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#> milestone event actor title created
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#> 81 unlabeled bioc-issue-bot, User, FALSE NA 2017-10-14 06:51:15
#> 82 commented mvaniterson, User, FALSE NA 2017-10-14 06:58:12
#> 83 commented bioc-issue-bot, User, FALSE NA 2017-10-14 07:02:15
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#> updated association
#> 1 2017-06-22 15:08:36 COLLABORATOR
#> 2 <NA> <NA>
#> 3 <NA> <NA>
#> 4 <NA> <NA>
#> 5 2017-06-22 15:29:56 COLLABORATOR
#> 6 <NA> <NA>
#> 7 <NA> <NA>
#> 8 <NA> <NA>
#> 9 2017-06-22 15:31:03 COLLABORATOR
#> 10 <NA> <NA>
#> 11 2017-06-23 06:41:41 COLLABORATOR
#> 12 2017-06-23 06:42:45 COLLABORATOR
#> 13 2017-06-23 06:51:54 COLLABORATOR
#> 14 2017-06-23 06:53:46 COLLABORATOR
#> 15 <NA> <NA>
#> 16 <NA> <NA>
#> 17 2017-06-24 06:13:30 COLLABORATOR
#> 18 <NA> <NA>
#> 19 2017-06-24 06:15:19 COLLABORATOR
#> 20 <NA> <NA>
#> 21 2017-06-27 12:45:51 COLLABORATOR
#> 22 2017-06-27 12:48:00 COLLABORATOR
#> 23 2017-06-30 12:12:30 NONE
#> 24 2017-06-30 12:15:18 COLLABORATOR
#> 25 2017-06-30 12:17:19 COLLABORATOR
#> 26 2017-07-07 10:44:05 COLLABORATOR
#> 27 2017-07-07 10:46:05 COLLABORATOR
#> 28 <NA> <NA>
#> 29 2017-07-07 16:01:30 NONE
#> 30 <NA> <NA>
#> 31 <NA> <NA>
#> 32 2017-07-12 15:06:44 COLLABORATOR
#> 33 <NA> <NA>
#> 34 2017-07-12 15:08:39 COLLABORATOR
#> 35 2017-07-13 06:33:05 COLLABORATOR
#> 36 2017-07-13 06:35:15 COLLABORATOR
#> 37 2017-07-13 09:01:19 COLLABORATOR
#> 38 2017-07-13 09:03:29 COLLABORATOR
#> 39 2017-07-13 13:10:28 COLLABORATOR
#> 40 2017-07-13 13:12:28 COLLABORATOR
#> 41 <NA> <NA>
#> 42 2017-07-21 11:25:15 COLLABORATOR
#> 43 <NA> <NA>
#> 44 2017-07-21 11:28:05 COLLABORATOR
#> 45 2017-10-03 15:56:45 NONE
#> 46 <NA> <NA>
#> 47 <NA> <NA>
#> 48 2017-10-03 15:56:39 NONE
#> 49 <NA> <NA>
#> 50 <NA> <NA>
#> 51 2017-08-15 07:34:39 COLLABORATOR
#> 52 2017-08-15 07:37:05 COLLABORATOR
#> 53 2017-08-15 07:38:11 NONE
#> 54 <NA> <NA>
#> 55 2017-10-03 15:56:26 NONE
#> 56 <NA> <NA>
#> 57 <NA> <NA>
#> 58 2017-10-03 15:56:14 NONE
#> 59 <NA> <NA>
#> 60 <NA> <NA>
#> 61 2017-10-03 15:56:07 NONE
#> 62 <NA> <NA>
#> 63 <NA> <NA>
#> 64 2017-10-03 15:55:58 NONE
#> 65 <NA> <NA>
#> 66 <NA> <NA>
#> 67 2017-09-22 22:18:30 NONE
#> 68 <NA> <NA>
#> 69 <NA> <NA>
#> 70 2017-09-28 09:47:54 NONE
#> 71 <NA> <NA>
#> 72 <NA> <NA>
#> 73 2017-10-03 15:55:48 NONE
#> 74 <NA> <NA>
#> 75 <NA> <NA>
#> 76 2017-10-13 15:01:22 NONE
#> 77 <NA> <NA>
#> 78 <NA> <NA>
#> 79 2017-10-13 15:37:12 NONE
#> 80 2017-10-14 06:51:15 COLLABORATOR
#> 81 <NA> <NA>
#> 82 2017-10-14 06:58:12 NONE
#> 83 2017-10-14 07:02:15 COLLABORATOR
#> 84 <NA> <NA>
#> 85 <NA> <NA>
#> 86 2017-10-16 14:47:56 COLLABORATOR
#> 87 <NA> <NA>
#> 88 2017-10-16 14:56:04 COLLABORATOR
#> 89 <NA> <NA>
#> 90 2017-10-16 15:32:33 NONE
#> 91 <NA> <NA>
#> 92 <NA> <NA>
#> 93 <NA> <NA>
#> 94 2017-10-28 06:46:33 COLLABORATOR
#> 95 <NA> <NA>
#> 96 2017-10-28 06:58:06 COLLABORATOR
#> 97 <NA> <NA>
#> 98 <NA> <NA>
#> 99 2017-10-29 06:34:03 COLLABORATOR
#> 100 2017-10-29 06:43:32 COLLABORATOR
#> 101 2017-10-29 07:25:05 COLLABORATOR
#> 102 2017-10-29 07:33:58 COLLABORATOR
#> 103 2017-10-29 07:40:17 NONE
#> 104 <NA> <NA>
#> 105 <NA> <NA>
#> 106 2017-11-11 04:10:00 NONE
#> 107 <NA> <NA>
#> 108 <NA> <NA>
#> 109 2017-11-12 10:48:01 COLLABORATOR
#> 110 2017-11-12 10:57:48 COLLABORATOR
#> 111 2017-11-13 12:00:30 COLLABORATOR
#> 112 2017-11-13 12:09:35 COLLABORATOR
#> 113 <NA> <NA>
#> 114 2017-11-28 20:46:01 COLLABORATOR
#> 115 <NA> <NA>
#> 116 2017-11-28 20:52:09 COLLABORATOR
#> 117 <NA> <NA>
#> 118 <NA> <NA>
#> 119 <NA> <NA>
#> 120 2017-11-29 06:45:32 COLLABORATOR
#> 121 <NA> <NA>
#> 122 2017-11-29 06:53:38 COLLABORATOR
#> 123 <NA> <NA>
#> 124 <NA> <NA>
#> 125 2017-11-29 18:05:54 NONE
#> 126 <NA> <NA>
#> 127 <NA> <NA>
#> 128 <NA> <NA>
#> 129 <NA> <NA>
#> 130 2017-11-29 18:06:04 COLLABORATOR
#> 131 2017-11-29 19:59:36 NONE
#> 132 <NA> <NA>
#> 133 <NA> <NA>
#> 134 2017-11-29 20:47:22 CONTRIBUTOR
#> 135 <NA> <NA>
#> text
#> 1 Hi @mvaniterson\n\nThanks for submitting your package. We are taking a quick\nlook at it and you will hear back from us soon.\n\nThe DESCRIPTION file for this package is:\n\n```\nPackage: omicsPrint\nTitle: Cross omic genetic fingerprinting\nVersion: 0.99.0\nAuthors@R: person("Maarten", "van Iterson", email ="mviterson@gmail.com", role = c("aut", "cre"))\nDescription: omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).\nDepends: R (>= 3.5), MASS\nImports: matrixStats, graphics, stats\nSuggests: BiocStyle, knitr, rmarkdown, testthat\nLicense: GPL (>= 2)\nEncoding: UTF-8\nLazyData: true\nRoxygenNote: 6.0.1\nbiocViews: QualityControl, Genetics, Epigenetics, Transcriptomics, DNAMethylation, Transcription, GeneticVariability\nVignetteBuilder: knitr\n```\n\n
#> 2 <NA>
#> 3 <NA>
#> 4 <NA>
#> 5 Your package has been approved for building. Your package is\nnow submitted to our queue.\n\n**IMPORTANT**: Please read [the instructions][1] for setting\nup a push hook on your repository, or further changes to your\nrepository will NOT trigger a new build.\n\n[1]: https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook\n
#> 6 <NA>
#> 7 <NA>
#> 8 <NA>
#> 9 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "skipped, ERROR".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170622113101.html\n\n
#> 10 <NA>
#> 11 Received a valid push; starting a build. Commits are:\n\n[9913455](https://github.com/molepi/omicsPrint/commit/9913455ad0b8169eaf1445bc1cfd5618de7f7941) set Depends: R (>=3.4) i.s.o. R (>=3.5)\n[47785b7](https://github.com/molepi/omicsPrint/commit/47785b7cb2e1fe814573dd088a2c622ce87380a1) Merge branch 'master' of https://github.com/molepi...\n
#> 12 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "skipped, ERROR".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170623024243.html\n\n
#> 13 Received a valid push; starting a build. Commits are:\n\n[c9abe1c](https://github.com/molepi/omicsPrint/commit/c9abe1c416a346f7f7d902ce44ac4559171b38ac) move additional vignette to inst/future\n
#> 14 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "ERROR, WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170623025345.html\n\n
#> 15 <NA>
#> 16 <NA>
#> 17 Received a valid push; starting a build. Commits are:\n\n[7656fc7](https://github.com/molepi/omicsPrint/commit/7656fc72b1422b2f9c59a4f01ed449c204da992d) bump version number\n
#> 18 <NA>
#> 19 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170624021517.html\n\n
#> 20 <NA>
#> 21 Received a valid push; starting a build. Commits are:\n\n[2becdd5](https://github.com/molepi/omicsPrint/commit/2becdd5616dcd66580182fc48090951b15972fb4) fix R CMD check note on triple colon operator\n
#> 22 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170627084759.html\n\n
#> 23 Dear Marcel Ramos, \r\nThe warnings the appear are from BiocCheck a few long lines and spaces. I would like to leave this as it is I think it clarifies the code. Can we close this issue and continue the review process?\r\n\r\nRegards, \r\nMaarten
#> 24 Received a valid push; starting a build. Commits are:\n\n[4842f74](https://github.com/molepi/omicsPrint/commit/4842f74dee395f63d526dc506b730fcb704f4ce1) add return all data when plot.it FALSE in inferRel...\n
#> 25 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170630081718.html\n\n
#> 26 Received a valid push; starting a build. Commits are:\n\n[be11beb](https://github.com/molepi/omicsPrint/commit/be11bebd0afd429e25c564b3a90e4b7cf16a9c9f) fix bug special colnames in .phasing\n[08f34fe](https://github.com/molepi/omicsPrint/commit/08f34fe5c8828b837c953e61d9215f84e12e1ee4) bump version number\n
#> 27 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170707064603.html\n\n
#> 28 <NA>
#> 29 Hi Maarten, @mvaniterson\r\nClear code is neatly formatted.\r\nYou don't have to worry about the Note from `BiocCheck`.\r\nThe number of lines over the limit are few.\r\n\r\nThank you,\r\nMarcel
#> 30 <NA>
#> 31 <NA>
#> 32 Received a valid push; starting a build. Commits are:\n\n[4fdb16e](https://github.com/molepi/omicsPrint/commit/4fdb16e4728e0c3c4bc69a573c88fabb4a68d783) update/extend vignettes and bump version number\n
#> 33 <NA>
#> 34 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170712110837.html\n\n
#> 35 Received a valid push; starting a build. Commits are:\n\n[2fea64e](https://github.com/molepi/omicsPrint/commit/2fea64ece0f6e539895cb18fe87b74a0f4f16c17) add html vignette\n
#> 36 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170713023514.html\n\n
#> 37 Received a valid push; starting a build. Commits are:\n\n[77b0cfc](https://github.com/molepi/omicsPrint/commit/77b0cfccced6c0709d104544c3197444b6593171) cleaning vignettes adding Makefile\n
#> 38 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170713050327.html\n\n
#> 39 Received a valid push; starting a build. Commits are:\n\n[806edbf](https://github.com/molepi/omicsPrint/commit/806edbf3a89b61e4f2c0d040be9118a500a463c2) update vignette\n
#> 40 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170713091227.html\n\n
#> 41 <NA>
#> 42 Received a valid push; starting a build. Commits are:\n\n[5c757e2](https://github.com/molepi/omicsPrint/commit/5c757e2f6c5d95f885bb726d3bd4ce119ea04715) update vignettes and bumped version number\n
#> 43 <NA>
#> 44 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170721072803.html\n\n
#> 45 Hi Maarten, @mvaniterson\r\nPlease reduce the size of your repository. \r\nI am currently getting a download size greater than 200 MB. \r\nYou should be excluding any compiled files and reports from the repository via `.gitignore`.\r\nIf you have already commited large files, I recommend you remove them and subsequently use the BFG Repo-Cleaner.\r\n\r\nBest regards,\r\nMarcel
#> 46 <NA>
#> 47 <NA>
#> 48 Any updates on this Maarten @mvaniterson ?
#> 49 <NA>
#> 50 <NA>
#> 51 Received a valid push; starting a build. Commits are:\n\n[f1a7634](https://github.com/molepi/omicsPrint/commit/f1a76344daba841f7f2d21bb959a87f42994b00b) remove pdf vignettes too large\n
#> 52 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20170815033704.html\n\n
#> 53 Dear Marcel,\n\nIndeed, I generated vignettes in pdf format which became too large. I've\nmade a new push and remove the pdfs only retaining the html vignettes.\n\nCheers,\nMaarten\n\nOn Tue, Aug 15, 2017 at 8:34 AM, bioc-issue-bot <notifications@github.com>\nwrote:\n\n> Received a valid push; starting a build. Commits are:\n>\n> f1a7634\n> <https://github.com/molepi/omicsPrint/commit/f1a76344daba841f7f2d21bb959a87f42994b00b>\n> remove pdf vignettes too large\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/Bioconductor/Contributions/issues/400#issuecomment-322397307>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AKEn6sgBnTwBZHk7v72X72-5WC4bDZB5ks5sYUoPgaJpZM4OCb36>\n> .\n>\n
#> 54 <NA>
#> 55 Hi Maarten, @mvaniterson\r\nSorry for the delay. I will have a look at your package soon. \r\nRegards,\r\nMarcel
#> 56 <NA>
#> 57 <NA>
#> 58 Hi Maarten, @mvaniterson\r\nI recommend that you use the [BFG-Repo Cleaner](https://rtyley.github.io/bfg-repo-cleaner/) for removing large git history files from your repository. \r\nI am currently getting a total size of `158M\tomicsPrint/` for your folder. \r\nRegards,\r\nMarcel
#> 59 <NA>
#> 60 <NA>
#> 61 Hi Maarten, @mvaniterson\r\n\r\nThank you for submitting to Bioconductor. \r\nPlease see `omicsPrint`'s review below. \r\n\r\nIf you have any questions, please feel free to contact me.\r\n\r\nBest regards,\r\nMarcel\r\n\r\n---\r\n\r\n# omicsPrint #400\r\n\r\nOverall, it is very useful to do quality control for multiple 'omics\r\nexperiments. It would be beneficial for your package to integrate these\r\nchecks along with a unifying multi-omics structure such as `MultiAssayExperiment`,\r\n`MultiDataSet`, etc. Please look into `RaggedExperiment` for\r\nrepresenting Copy Number data as the functionality may be of interest.\r\n\r\n## DESCRIPTION\r\n\r\n* Please wrap your lines to less than 80 width.\r\n* There are no Bioconductor packages in your Imports field.\r\nWe recommend that you work with the existing Bioconductor infrastructure.\r\n\r\n## NAMESPACE \r\n\r\nLooks okay\r\n\r\n## vignettes\r\n\r\n* Suggestion: It would be good to have an example of functionality with\r\nreal-world data put here instead of in `inst/doc`\r\n\r\n## R\r\n\r\n* Please support existing Bioconductor infrastructure as input for\r\n`alleleSharing` such as `SummarizedExperiment`. \r\n\r\n## Formatting\r\n\r\n* Please keep code neat and do not go past 80 column widths. This\r\nimproves readability.\r\n\r\n---
#> 62 <NA>
#> 63 <NA>
#> 64 Hi Maarten, @mvaniterson \r\nAny updates on making changes to the package? \r\nRegards,\r\nMarcel
#> 65 <NA>
#> 66 <NA>
#> 67 Hi Marcel,\nI got another job. I'm trying to get someone how can replace me in this submission.\nCheers,Maarten\n\n\nVerzonden vanaf mijn Samsung Galaxy-smartphone.\n-------- Oorspronkelijk bericht --------Van: Marcel Ramos <notifications@github.com> Datum: 22-09-17 20:31 (GMT+01:00) Aan: Bioconductor/Contributions <Contributions@noreply.github.com> Cc: "M. van Iterson" <mviterson@gmail.com>, Mention <mention@noreply.github.com> Onderwerp: Re: [Bioconductor/Contributions] omicsPrint (#400) \nHi Martin, @mvaniterson\n\nAny updates on making changes to the package?\n\nRegards,\n\nMarcel\n\n—\nYou are receiving this because you were mentioned.\nReply to this email directly, view it on GitHub, or mute the thread.\n\n\n \n \n\n\n\n\n{"api_version":"1.0","publisher":{"api_key":"05dde50f1d1a384dd78767c55493e4bb","name":"GitHub"},"entity":{"external_key":"github/Bioconductor/Contributions","title":"Bioconductor/Contributions","subtitle":"GitHub repository","main_image_url":"https://cloud.githubusercontent.com/assets/143418/17495839/a5054eac-5d88-11e6-95fc-7290892c7bb5.png","avatar_image_url":"https://cloud.githubusercontent.com/assets/143418/15842166/7c72db34-2c0b-11e6-9aed-b52498112777.png","action":{"name":"Open in GitHub","url":"https://github.com/Bioconductor/Contributions"}},"updates":{"snippets":[{"icon":"PERSON","message":"@LiNk-NY in #400: Hi Martin, @mvaniterson \\r\\nAny updates on making changes to the package? \\r\\nRegards,\\r\\nMarcel"}],"action":{"name":"View Issue","url":"https://github.com/Bioconductor/Contributions/issues/400#issuecomment-331526217"}}}
#> 68 <NA>
#> 69 <NA>
#> 70 Hi Marcel,\n\nWe found a someone, Davy Cats, who is willing to continue the submission\nand will make the requested additions.\n\nHis is in the cc!\n\nHow do we proceed the changing of developers?\n\nCheers,\nMaarten\n\n\n\nOn Fri, Sep 22, 2017 at 8:31 PM, Marcel Ramos <notifications@github.com>\nwrote:\n\n> Hi Martin, @mvaniterson <https://github.com/mvaniterson>\n> Any updates on making changes to the package?\n> Regards,\n> Marcel\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/Bioconductor/Contributions/issues/400#issuecomment-331526217>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AKEn6qyBkIbDSZu0_erHCT-jX5gfTnLEks5sk_ztgaJpZM4OCb36>\n> .\n>\n
#> 71 <NA>
#> 72 <NA>
#> 73 Hi Maarten, @mvaniterson\r\n\r\nPlease add Davy to [molepi/omicsPrint](https://github.com/molepi/omicsPrint) so that he has commit access to the repository. \r\n\r\nHe should also be included in the Description file as the maintainer. \r\nPlease also have him fill the Google Form found here (http://master.bioconductor.org/developers/how-to/git/new-package-workflow/) in Step 1.\r\n\r\nRegards,\r\nMarcel
#> 74 <NA>
#> 75 <NA>
#> 76 Hi Maarten, @mvaniterson \r\nAny updates on this? \r\nThanks,\r\nMarcel
#> 77 <NA>
#> 78 <NA>
#> 79 Hey Marcel,\r\n\r\nI have filled in the form. \r\n\r\nBest regards,\r\nDavy Cats
#> 80 Received a valid push; starting a build. Commits are:\n\n[37a6939](https://github.com/molepi/omicsPrint/commit/37a69396a837e3c0155993d59539c4709a0a91f2) add support SummarizedExperiment, MultiAssayExperi...\n[a3f93ac](https://github.com/molepi/omicsPrint/commit/a3f93ace452df344d80051812dce7ac4f286a52b) adding import from methods extends\n[573a6bf](https://github.com/molepi/omicsPrint/commit/573a6bf8fe90c98d0ff8412d4e76fd2666f9ef75) unit tests, vignette updates and version bump\n[1a4094b](https://github.com/molepi/omicsPrint/commit/1a4094bcaa2f432370949b8d6262fc4e004c305b) remove .Rhistory\n[2927480](https://github.com/molepi/omicsPrint/commit/2927480da19d047dd5c6b6faded7fe9ef1c796a2) add data and update vignettes\n[a17a0e9](https://github.com/molepi/omicsPrint/commit/a17a0e91ee9e8e1d8df910d667727e66d17aa6dc) some update for running vignettes\n[ccbcc8d](https://github.com/molepi/omicsPrint/commit/ccbcc8d4f3708ae91dd70bad6aac8113e2fea31d) adding data and update vignettes\n
#> 81 <NA>
#> 82 Dear Marcel,\n\nDavy has extended the package with an interface for SummarizedExperiment\nobjects. We have added data that was available in a local package\n(DNAmArray) to omicsPrint this makes it easier to run the additional\nvignettes.\n\nWe still struggle with how to add the extended vignettes because they\nrequire data download from GEO which takes too long for the bioc build\nsystem. I check some other vignettes, i.e MultiAssayExperiments and noticed\nthat not all are build by the bioc build system but use prebuild vignettes.\nWe provide these for omicsPrint in the inst/doc folder. Would this be\nsufficient?\n\nPlease let us known if there is a better approach.\n\nKind regards,\nMaarten\n\nOn Fri, Oct 13, 2017 at 5:37 PM, DavyCats <notifications@github.com> wrote:\n\n> Hey Marcel,\n>\n> I have filled in the form.\n>\n> Best regards,\n> Davy Cats\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/Bioconductor/Contributions/issues/400#issuecomment-336488325>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AKEn6mPLRFB32Srq93poqCgDUqzqKiNSks5sr4OqgaJpZM4OCb36>\n> .\n>\n
#> 83 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "ERROR, WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171014030214.html\n\n
#> 84 <NA>
#> 85 <NA>
#> 86 Received a valid push; starting a build. Commits are:\n\n[b9c48b7](https://github.com/molepi/omicsPrint/commit/b9c48b733af904e491dfff4eb5da9d3e0c97be77) version bump\n
#> 87 <NA>
#> 88 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171016105603.html\n\n
#> 89 <NA>
#> 90 Hi Maarten, @mvaniterson\r\nYes, ideally you would have a smaller dataset that can be used as an example \r\nin the vignette. \r\n\r\nPlease try to keep the data downloads minimal as your package\r\ncould timeout in our build system.\r\n\r\nWe don't provide prebuilt vignettes in `MultiAssayExperiment` but rather a reference\r\nsheet for methods for the user's convenience. We also don't encourage static code\r\nin the vignettes and we are working on providing a runnable example for building a\r\n`MultiAssayExperiment` from online resources.\r\n\r\nBest regards,\r\nMarcel\r\n\r\n
#> 91 <NA>
#> 92 <NA>
#> 93 <NA>
#> 94 Received a valid push; starting a build. Commits are:\n\n[d3675aa](https://github.com/molepi/omicsPrint/commit/d3675aab97050f9f517382f00f809b4741e41339) new vignette and formatting\n[c2e4908](https://github.com/molepi/omicsPrint/commit/c2e490896c5884cdaf12a3f477cb325d339a945f) made a few textual changes\n[b1ce435](https://github.com/molepi/omicsPrint/commit/b1ce435a5eb2f03a90296e75b2b19dfc09a1d985) adding new vignette to master and bump version num...\n
#> 95 <NA>
#> 96 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nCongratulations! The package built without errors or warnings\non all platforms.\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171028025805.html\n\n
#> 97 <NA>
#> 98 <NA>
#> 99 Received a valid push; starting a build. Commits are:\n\n[2a72c6d](https://github.com/molepi/omicsPrint/commit/2a72c6da4fb9cceff08986c835c4561597a1dc36) add vignettebuilder info to vignettes\n
#> 100 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nCongratulations! The package built without errors or warnings\non all platforms.\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171029024331.html\n\n
#> 101 Received a valid push; starting a build. Commits are:\n\n[c89e469](https://github.com/molepi/omicsPrint/commit/c89e469121d3e3dc9239dbd576c1cea3bd838775) use makeSummarizedExperimentFromExpressionSet\n
#> 102 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nCongratulations! The package built without errors or warnings\non all platforms.\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171029033357.html\n\n
#> 103 Hi Marcel,\n\nWe found a smaller dataset on geo and added a use-case with this data to\nthe vignette. The package and vignette pass all checks now!\n\nCheers,\nMaarten\n\nOn Mon, Oct 16, 2017 at 5:31 PM, Marcel Ramos <notifications@github.com>\nwrote:\n\n> Hi Maarten, @mvaniterson <https://github.com/mvaniterson>\n> Yes, ideally you would have a smaller dataset that can be used as an\n> example\n> in the vignette.\n>\n> Please try to keep the data downloads minimal as your package\n> could timeout in our build system.\n>\n> We don't provide prebuilt vignettes in MultiAssayExperiment but rather a\n> reference\n> sheet for methods for the user's convenience. We also don't encourage\n> static code\n> in the vignettes and we are working on providing a runnable example in\n> MultiAssayExperiment.\n>\n> Best regards,\n> Marcel\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/Bioconductor/Contributions/issues/400#issuecomment-336924469>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AKEn6vpFpZlyM1eermcuobjkZnGlJlLwks5ss3bagaJpZM4OCb36>\n> .\n>\n
#> 104 <NA>
#> 105 <NA>
#> 106 Hi Maarten, @mvaniterson \r\n* The built tarball is quite large at `8 Mb`. Please reduce the size of the tarball by using smaller\r\ndata files in the package.\r\n* Please do not provide static vignettes in the `docs` directory. We highly encourage runnable vignettes.\r\n\r\nMany issues can arise with static code as it is not tested and API changes can often break it.\r\n\r\nWe recently increased the time allowed for vignettes to run on our build machines.\r\nThis should provide some leeway in the time it takes to run vignette code in your package.\r\n\r\n* The git repository seems quite large, registering at `172 Mb` on my machine. Please note that after using the BFG-repo cleaner, all local repos that did not get the BFG treatment should be deleted and such repos should be re-cloned from GitHub.\r\n\r\nRegards,\r\nMarcel
#> 107 <NA>
#> 108 <NA>
#> 109 Received a valid push; starting a build. Commits are:\n\n[81e35ad](https://github.com/molepi/omicsPrint/commit/81e35ad6ab496c431d4faab411c3f62f9d8f9069) adding Hardy-Weinberg filter\n
#> 110 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nCongratulations! The package built without errors or warnings\non all platforms.\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171112055746.html\n\n
#> 111 Received a valid push; starting a build. Commits are:\n\n[099ae0b](https://github.com/molepi/omicsPrint/commit/099ae0b18ea38533e1ddbe53accf6fbc421a2c6e) adding new vignette to master and bump version num...\n[a084b66](https://github.com/molepi/omicsPrint/commit/a084b666317e364c08e5316964fe1d7d726e8a75) add vignettebuilder info to vignettes Former-com...\n[ebe438b](https://github.com/molepi/omicsPrint/commit/ebe438bb4d6cde2223f6755bafce0e13fb3bf519) use makeSummarizedExperimentFromExpressionSet Fo...\n[c4e6b67](https://github.com/molepi/omicsPrint/commit/c4e6b67bb9edf01bad4c0ad7727b5f10e0ace1f8) adding Hardy-Weinberg filter Former-commit-id: 8...\n
#> 112 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nCongratulations! The package built without errors or warnings\non all platforms.\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171113070934.html\n\n
#> 113 <NA>
#> 114 Received a valid push; starting a build. Commits are:\n\n[6145b68](https://github.com/molepi/omicsPrint/commit/6145b680c2508f809efbeb5a4eaf618508d5377b) reducing size data\n
#> 115 <NA>
#> 116 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nOn one or more platforms, the build results were: "WARNINGS".\nThis may mean there is a problem with the package that you need to fix.\nOr it may mean that there is a problem with the build system itself.\n\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171128155208.html\n\n
#> 117 <NA>
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#> 120 Received a valid push; starting a build. Commits are:\n\n[34dfe34](https://github.com/molepi/omicsPrint/commit/34dfe34621ba76c236eceda4c3fb1a54a3cfaee4) change R version to 3.5 and bump version number\n
#> 121 <NA>
#> 122 \nDear Package contributor,\n\nThis is the automated single package builder at bioconductor.org.\n\nYour package has been built on Linux, Mac, and Windows.\n\n \nCongratulations! The package built without errors or warnings\non all platforms.\n \nPlease see the following build report for more details:\n\nhttp://bioconductor.org/spb_reports/omicsPrint_buildreport_20171129015336.html\n\n
#> 123 <NA>
#> 124 <NA>
#> 125 Hi Maarten, @mvaniterson \r\n\r\nThank you for making those changes.\r\n\r\nYour package has been accepted. Thank you for contributing to Bioconductor!\r\n\r\nBest regards,\r\nMarcel
#> 126 <NA>
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#> 130 Your package has been accepted. It will be added to the\nBioconductor Git repository and nightly builds. Additional\ninformation will be sent to the maintainer email address in\nthe next several days.\n\nThank you for contributing to Bioconductor!\n
#> 131 Hi Marcel,\n\nThanks for the good news!\n\nRegards,\nMaarten\n\nOn Wed, Nov 29, 2017 at 7:05 PM, Marcel Ramos <notifications@github.com>\nwrote:\n\n> Hi Maarten, @mvaniterson <https://github.com/mvaniterson>\n>\n> Thank you for making those changes.\n>\n> Your package has been accepted. Thank you for contributing to Bioconductor!\n>\n> Best regards,\n> Marcel\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/Bioconductor/Contributions/issues/400#issuecomment-347945568>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AKEn6qdp2_u2ZrsVIIHqaCxOk_57xlC8ks5s7Z0DgaJpZM4OCb36>\n> .\n>\n
#> 132 <NA>
#> 133 <NA>
#> 134 The master branch of your GitHub repository has been added to Bioconductor's git repository.\n\nTo use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/mvaniterson.keys is not empty), then no further steps are required. Otherwise, do the following:\n\n1. [Add an SSH key to your github account][]\n1. [Submit your SSH key to Bioconductor][]\n\n[Add an SSH key to your github account]: https://help.github.com/articles/connecting-to-github-with-ssh/\n[Submit your SSH key to Bioconductor]: https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform\n\nSee further instructions at\n\nhttps://bioconductor.org/developers/how-to/git/\n\nfor working with this repository. See especially\n\nhttps://bioconductor.org/developers/how-to/git/new-package-workflow/\nhttps://bioconductor.org/developers/how-to/git/sync-existing-repositories/\n\nto keep your GitHub and Bioconductor repositories in sync.\n\nYour package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at\n\nhttps://bioconductor.org/checkResults/\n\n(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using `biocLite(\\"omicsPrint\\")`. The package 'landing page' will be created at\n\nhttps://bioconductor.org/packages/omicsPrint\n\nIf you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.\n
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